/* 
    Document   : root
    Created on : 17 May 2007, 11:09
    Author     : chris, mike, nikki
    Description:
        User interface stylesheet for autoSNPdb
*/

body { 
    font-family: Arial, Verdana, Helvetica;
    font-size: 76%;
    background-color: #FFFFFF;
    color: #000000;
    padding-top: 90px;
    background-image: url(headerbg.gif);
    background-position: top left;
    background-repeat: repeat-x;
}

#header {
    position: absolute;
    height: 80px;
    left: 0;
    top:  0;
    right: 0;
    _width: 100%;
}

#footer {
    text-align: center;
    margin-left: auto;
    margin-right: auto;
    font-size: 0.8em;
}

.searchExplain {
    font-size: 0.9em;
    margin-left: auto;
    margin-right: auto;
}

.dataview {
    width: 800px;
    margin-left: auto;
    margin-right: auto;
    border-width: 1px;
    border-spacing: 0px;
    border-style: solid;
    border-color: black;
    border-collapse: collapse;

}

.dataview td {
    vertical-align: top;
    border-width: 1px;
    padding: 10px;
    border-style: inset;
    border-color: black; 
}

.dataviewlabelNowidth {
    font-weight: bold;
}

.dataviewlabel {
    font-weight: bold;
    width: 200px;
}

.searchview {
    width: 800px;
    margin-left: auto;
    margin-right: auto;
    border-width: 1px;
    border-spacing: 0px;
    border-style: solid;
    border-color: black;
    border-collapse: collapse;

}

.searchview td {
    vertical-align: top;
    border-width: 1px;
    padding-left: 10px;
    padding-right: 10px;
    border-style: none;

}

.searchviewlabel {
    font-weight: bold;
    width: 200px;
}

.dataviewlowpad {
    width: 800px;
    margin-left: auto;
    margin-right: auto;
    border-width: 1px;
    border-spacing: 0px;
    border-style: solid;
    border-color: black;
    border-collapse: collapse;

}

.dataviewlowpadheader {
    width: 800px;
    margin-left: auto;
    margin-right: auto;
    border-width: 2px;
    border-spacing: 0px;
    border-style: solid;
    border-color: black;
    border-collapse: collapse;
}

.expander {
    position: relative; 
    width: 20px; 
    height: 20px; 
    border-right: 2px solid black;
}

a.sequenceExpander {
    text-decoration: none;
    color: blue;
    font-weight: bold;
}

}
.expandSequenceFooter {
    font-size: 0.9em;
}

.expander img {
    border: 0;
}

.dataviewlowpad td {
    vertical-align: top;
    border-width: 1px;
    padding: 3px;
    border-style: inset;
    border-color: black; 
}

div.pager {
    text-align: center;
    width: 800px;
    margin-left: auto;
    margin-right: auto;
    font-size: 1.2em;
}

.pager table {
    border: none;
    width: 100%;
}

.pager td {
    width: 33%;
    border: none;
}

.searchPriRef {
/* The main heading in ContigBean.java relies on this having no width specified...*/
    font-weight: bold;
    text-decoration: underline;
}

.highlight {
    text-decoration: inherit;
    background-color: #ffffaa;
}

span.sequence {
    font-family: "Courier New", Courier, Monaco, monospace;
}

/*  the consed-like viewer */

tr.consed {
    font-family: "Courier New", Courier, Monaco, monospace;
    font-size: 14px;
    letter-spacing: 3px;
    border-bottom: solid gray 1px;
    text-align: left;
    white-space: pre;
    height: 18px;
}

tr.consedCON {
    font-family: "Courier New", Courier, Monaco, monospace;
    font-size: 14px;
    letter-spacing: 3px;
    text-align: left;
    white-space: pre;    
    border-bottom: solid black 2px;
}

span.sequenceCONSED {
    border-bottom: solid gray 1px;
    letter-spacing: 3px;
}

span.sequenceCLIP {
    background-color: darkgray;
    color: white;
    border-bottom: solid gray 1px;
    letter-spacing: 3px;
}

span.sequenceCLIPSNP {
    background-color: darkgray;
    color: white;
    border-left: solid red 1px;
    border-right: solid red 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceA {
    background-color: #90ee90;
    border-left: solid red 1px;
    border-right: solid red 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceT {
    background-color: #eea2ad;
    border-left: solid red 1px;
    border-right: solid red 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceG {
    background-color: #ffec8b;
    border-left: solid red 1px;
    border-right: solid red 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceC {
    background-color: #b0c4de;
    border-left: solid red 1px;
    border-right: solid red 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceN {
    background-color: #999999;
    border-left: solid red 1px;
    border-right: solid red 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequence- {
    border-left: solid red 1px;
    border-right: solid red 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceNoSnp {
    border-left: solid red 1px;
    border-right: solid red 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

td.sequenceNUM {
    font-family: "Courier New", Courier, Monaco, monospace;
    font-size: 12px;
    width: 11px;
    text-align: center;
    white-space: nowrap;
}

td.sequenceTOP {
    font-family: "Courier New", Courier, Monaco, monospace;
    font-weight: bold;
    border-bottom: solid black 2px;
    text-align: center;
    font-size: 14px;
}

td.sequenceLAB {
    font-family: "Courier New", Courier, Monaco, monospace;
    border-bottom: solid gray 1px;
    font-size: 14px;
    white-space: pre;
}

td.sequenceARR{
    border-right: solid black 2px;
    font-family: "Courier New", Courier, Monaco, monospace;
    letter-spacing: 3px;
    border-bottom: solid gray 1px;
    font-size: 14px;
}

/*SBS Viwewer*/

span.sequenceCLIPSNPSBS {
    background-color: darkgray;
    color: white;
    border-left: solid white 1px;
    border-right: solid white 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceASBS {
    background-color: #90ee90;
    border-left: solid white 1px;
    border-right: solid white 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceTSBS {
    background-color: #eea2ad;
    border-left: solid white 1px;
    border-right: solid white 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceGSBS {
    background-color: #ffec8b;
    border-left: solid white 1px;
    border-right: solid white 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceCSBS {
    background-color: #b0c4de;
    border-left: solid white 1px;
    border-right: solid white 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceNSBS {
    background-color: #999999;
    border-left: solid white 1px;
    border-right: solid white 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequence-SBS {
    border-left: solid white 1px;
    border-right: solid white 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

span.sequenceNoSnpSBS {
    border-left: solid white 1px;
    border-right: solid white 1px;
    border-bottom: solid gray 1px;
    letter-spacing: 1px;
}

td.SBSPOS {    
    border-left: solid white 1px;
    border-right: solid white 1px;
    width: 9px;
    text-align: center;
}

table.SBSPOSBOT {
    border-bottom: solid black 2px;
}
/* end consed stuff */

.alignment {
    font-family: "Courier New", Courier, Monaco, monospace;
    text-align: center;
    padding: 0px;
    border-spacing: 0px;
    border-style: none;
    border-collapse: collapse;
    margin-left: auto;
    margin-right: auto;
}

#alignmentContainer {
    
    margin-left: auto;
    margin-right: auto;
}

/* not a comment */

.alignment td {
    padding: 1px;
    margin: 0px;
    border-bottom: 1px dotted gray;
}

.alignment th {
    padding: 1px;
    margin: 0px;
    border-top: 2px solid black;
    border-bottom: 2px solid black;
    background-color: #EEEEEE;
}

.alignmentHeader {
    border: 2px solid #000000;
}

.snpalign {
    border-left: 1px solid red;
    border-right: 1px solid red;
}

td.cultivar {
    border: none;
}

#searchbox {
    width: 600px;
    margin-left: auto;
    margin-right: auto;
    padding: 10px;
    border: 2px solid #000000;
    font-weight: bold;
}

#searchboxtitle {
    position: absolute;
    margin-top: -43px;
    _margin-top: -35px;
    margin-left: -20px;
    font-size: 1.4em;
    background-color: white;
    font-weight: bold;
}

td.halfspan {
    padding: 20px;
    width: 50%;
}

td.fullspan {
    padding: 20px;
    width: 100%;
}

span.searchbox {
    font-size: 1.4em;
    font-weight: bold;
}

select, input {
    border: 2px solid #feb601;
    width: 100%;
    font-size: 1.2em;
    font-weight: bold;
    color: #333333;
}

input.searchbar {
    border: 2px solid #feb601;
    width: 87%;
    font-size: 2em;
    font-weight: bold;
    color: #333333;
}

input.submitbutton {
    border: 2px solid #feb601;
    width: 10%;
    font-size: 2em;
    font-weight: bold;
    color: #000000;
    background-color: #feb601;
}

input.submitbutton:hover {
    color: #FFFFFF;
}

h1 {
    color: #FFFFFF;
    font-size: 2.6em;
    z-index: 60;
    text-align: right;
    top: 20px;
    right: 10px;
    position: absolute;
    text-decoration: none;
}

h2 {
    font-family: Arial, Verdana, Helvetica;
    font-size: 1.4em;
    text-align: center;
    font-weight: bold;
    padding: 0px;
    margin: 0px;
}

#dhtmltooltip{
position: absolute;
left: -300px;
width: 150px;
border: 1px solid black;
padding: 2px;
background-color: lightyellow;
visibility: hidden;
z-index: 100;
}

#dhtmlpointer{
position:absolute;
left: -300px;
z-index: 101;
visibility: hidden;
}


#consedMain {
    width: 800px; 
    height: auto; 
    border: solid black 2px; 
    margin-left: auto; 
    margin-right: auto;
}

div.errorBLAST {
    width: 600px;
    margin-left: auto;
    margin-right: auto;
    padding: 10px;
    border: 1px solid red;
    font-weight: bold;
    color: red;
    background-color: #EEEEEE;
}

input.submitbuttonBLAST {
    border: 2px solid #feb601;
    width: 150px;
    font-size: 2em;
    font-weight: bold;
    color: #000000;
    background-color: #feb601;
    text-align: center;
}

textarea.blastInput {
    border: 2px solid #feb601;
    color: #333333;
    font-size: 1em;
    font-family: "Courier New", Courier, Monaco, monospace;
}

h3 {
    color: #FFFFFF;
    font-size: 1em;
    z-index: 60;
    text-align: right;
    top: 50px;
    right: 10px;
    position: absolute;
}

div.errorGENERAL {
    width: 600px;
    margin-left: auto;
    margin-right: auto;
    padding: 10px;
    border: 1px solid red;
    font-weight: bold;
    color: red;
    background-color: #EEEEEE;
}

.searchNoResult {
    width: 800px;
    margin-left: auto;
    margin-right: auto;
    border-width: 1px;
    border-spacing: 0px;
    border-style: solid;
    border-color: black;
    font-weight: bold;
    text-align : center;
    font-size :2em ;
}